You have a good point there although I've given up on labeling them actually.
In each session I'll shoot the LCC in order with the main images and then use the image number to find the right one - the LCC will be obvious from how close it is in sequence # to the image shots and also I always shoot them in order from left -> right or rise -> fall plus the obligatory blank frames with my hand between set ups. I typically shoot the scene with the set up and then the LCC set at the end before I make a movement change. The LCC drop down does get longer & longer & longer though over time, at least until Phase One fix this aspect of the workflow.
Right now I don't have tilts to contend with as well though. Instead I have to remember to label focus stack sequences which I also try to always shoot in the same order.
KISS works for me. Mostly.
For the OP: I shoot LCCs for all lenses up to my Rodenstock 90 HR-W. I don't normally bother with the 90 unless I use movements in which case I will although it's seldom necessary although as Bob mentioned you do get the benefit of dust removal if you shoot an LCC.