Actually the two images line up fine. I will try to post some crops later today.
I simply converted them in C1, made sure that any "lens" corrections were off, then opened them in CC 2014, via bridge. Loaded them into photoshop layers via the tool menu, then ran an auto align. They line up 100%, no problems with the bulidings, the Belfast, (I love that ship), etc. The only thing that won't align is one of the cranes on the left side, but that is obviously motion of the crane. You can clearly see that it "moved" considerably in position in the two images. All the other stationary cranes all line up If you are doing this I have found it's "key" to turn off any type of lens corrections in C1 or LR as these tend to screw up the alignment process. It's much simpler to combine. C1 really doesn't have any corrections for most of the tech lenses, however I believe in the latest version they have added some for the rodies. I wasn't sure which lens was used anyway. All the building aline fine, my way to test this is paint back one layer from the other and see if you get any misalignment in the lines of the buildings, which I did not.
There are some very very faint movements on the tall building's edge on the right but no where near enough to matter, I found it very easy to combine the two with a soft edge brush. There are also a few issues on the extreme left where some people are standing on a quay or dock, but I believe that may be movement.
I also did not apply the LCC in my test, but I can't see how that would alter anything, but will try that later.
After I ran auto align layers, I simple painted back to get the composition I wanted.
This is standard proceedure for me with any bracketed images where I am not using the camera to shoot the bracket, and I have hands on the lens, i.e. in this case the shutter speed setting. Considering that several filters were added etc. the alignment is very good IMO.
In the crop, I have brought back the lighter shot of the building, you can see that one of the cranes on top has moved. That is not an alignment issue, nothing would align that. It moved. But the building have no issues at all. There is a slight slight halo on the right edge, that would be very simple to remove, just did not take the time. The other hot spots just show where I painted in the other image so you can see both are aligned around the building edges.
Paul