Glad to hear that you got it! The closer a rear element is, the more likely anything on it will affect an image. The front element is a whole 'nother story - it can be disgusting and never affect an image!
I use an older Zeiss Stemi with an LED ring illuminator. I have the scope for other purposes (hot-air rework and microsoldering), but it just work perfectly for sensor cleaning.
PEC-Pads are designed for cleaning film substrates (along with PEC-12), not exactly for sensors. The old Copperhill method got people started using them, but I've never used them for sensors or optics. They are lint-free - as long as you don't cut them, disturb the heat cut edges, or stretch the grain (like when wrapping on a paddle), that's when they start being a fiber distributor. I use the VD MF swabs with Sensor Clean or fiber optic polishing/cleaning cloths, which are probably what comes in the CI cleaning kit.
Gel sticks or "gummy bears on a stick" work ok when new, but start to leave residue on the sensor that'll show up as little ghosts after they age a bit. The residue can be a nightmare to remove as it'll smear like crazy, no matter what solvent is used. Those things need to be replaced often, no matter how much you clean them afterwards. If you do rinse them, use distilled water - not tap as the minerals will cause more headaches.
As far as methodology goes, my method is:
1. Examine the sensor with the scope. If only one or two dust spots exist, I leave it alone. You'll never have a perfectly dust free sensor.
2. For dust, I use Chemtronics Ultrajet All-way duster to blow *above* and across the sensor, then examine again. The All-Way will never expel liquid at any angle.
3. Use fiber optic polishing swabs, dry, to pick up or move stuck dust, then blow again. The swabs are
Sanyo Huby-340 BB-001.
4. If a wet stain exists, I use a VD swab with Sensor Clean for a quick swipe. I put on anti-static finger cots at this point to keep skin shedding down from recontaminating the sensor.
5. For a stubborn stain or spots, I'll use the swabs or pads and Eclipse (if I have a fresh bottle), Sensor Clean, or reagent grade methanol. I've cut the paddles from VD swabs to different sizes so that I can wrap the fiber optic polish pads around them to give a nice handle.
6. To spot clean stubborn stains, I use the Sanyo swabs with methanol and roll the swab over the spot, "scrubbing" if necessary.
6. Once the main sensor path is clean, I'll use more of the BB-001 swabs to clean the remnants left by swab/pad pushed into the corners of the sensor so that they won't fall back onto the sensor.
7. Before reassembling the back/body, I'll open the optical path through the camera body and blow through with Ultrajet to remove any dust trapped inside.