This does look like a solid method for keeping the lens calibration consistent between different shutters (and definitely the method I would prefer!); or at the very least a good benchmark/baseline to start at before further optical tests and tweaking to see if further improvements might be obtained.What I have done, which is a little bit ghetto as they say, is to measure the length of the entire lens in the original shutter. If you can put it into the new shutter and match the measurement it should be good. I've done this with a dial gauge indicator which measures to 0.01 mm. With very small measurements you can more or less read half way between the markings for better precision but it's technically outside of the tolerance of the gauge. There are more expensive gauges with higher precision.
Ideally you need a calibrated surface plate to put the lens on for the measurements. I don't have one but managed to get some good readings using a 30mm thick sheet of melamine. The dial gauge goes on a heavy stand and you put the original lens between the gauge and the surface plate, zero the dial gauge, replace the shutter, put it back under the gauge and check the difference. You should move the lens around and take measurements at various locations. If everything is set up well the dial gauge reading should not fluctuate as you move the lens around. It is quite awkward resting the gauge plunger on the edge of the lens barrel so I rested a glass lens filter on top as a reference surface to take readings off. The actual height of it doesn't matter because you are just looking for any difference.
With a proper surface plate and gauge stand you can move the gauge around relative to the lens but I think moving the lens is more accurate and less prone to error. A test indicator instead of a plunger style indictor may be even more accurate and easier to take the measurements from the actual lens barrel, however using the filter as a reference surface isn't bad as it averages out any imperfections that could be in the metal barrel.
I was reshuttering a lens from a SINAR DB mount hence my calibers weren't big enough to take the measurement. Doing it the way I have described also avoids errors from not keeping the calibers or micrometer perpendicular to the object you are measuring.
I've also done what rdeloe suggests with another lens I have, on my Cambo with the IQ4-150. Using live view and a distant object to focus on and taking some frames to compare at 100%. I reshuttered a SINAR 55 mm digital lens to Copal and wanted to check whether the spacing was effecting performance (was great on the Leaf Credo 60, could start to see limitations on the IQ4). The measurement with the gauge is a good starting point though.
All of this depends on the lens being in spec in the original mount so results could vary.
My question would be whether it matters about where the aperture is placed in between the front and rear cells and whether that makes any difference with optical performance? I unfortunately know very little about optical design; and although I assume it wouldn't make any measurable difference I do realise that in this business distances in the microns can have significant impact.
Some people shim the rear lens group, others have stated that preferentially the front should be shimmed in accordance to the manufacturer's recommendation, and I wonder what the practical difference between the two options would be: either to not mess with the manufacturer's stated flange focal distance, the precise placement of the aperture/shutter in between the front and rear cells, or some other obvious reason I'm ignorant of.
Maybe one day when I get some suitable gear I'll just reverse the Copal shutter on a lens and see if it makes a noticeable difference to the lens' behaviour.